Experience

 
 
 
 
 

Bioinformatics Lead

Human Immunology Core, Perelman School of Medicine, University of Pennsylvania

Sep 2014 – Nov 2018 Philadelphia, PA
 
 
 
 
 

Bioinformatics Software Engineer

Systems Immunology Lab, School of Biomedical Engineering, Drexel University

Sep 2014 – Nov 2018 Philadelphia, PA
 
 
 
 
 

Research Assistant

Applied Informatics Group, Drexel University

Mar 2011 – Aug 2014 Philadelphia, PA
 
 
 
 
 

Visiting Scientist

Czech Technical University

Jan 2011 – Mar 2011 Prague, Czech Republic
 
 
 
 
 

Student Researcher

U.S. Naval Research Laboratory

Jan 2010 – Mar 2011 Washington, DC
 
 
 
 
 

Research Assistant

Institute for Applied Comment and Information Networking

Apr 2009 – Mar 2010 Camden, New Jersey
 
 
 
 
 

Web Developer

phillyBurbs.com

Apr 2008 – Apr 2009 Tullytown, PA

Recent Publications

AIRR Community Standardized Representations for Annotated Immune Repertoires

ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data

Computational Evaluation of B-Cell Clone Sizes in Bulk Populations

Human Lymph Nodes Maintain TCF-1textsuperscripthi Memory T Cells with High Functional Potential and Clonal Diversity throughout Life

Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data

An atlas of B-cell clonal distribution in the human body

Insight into Rhinovirus-Induced Asthma Exacerbation Using High-Throughput Immunosequencing of B-Cell Repertoires

ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

Biopython Update 2016

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Dynamic Selection of Persistence and Transport Layer Protocols in Challenged Networks

A comparison of group-based data persistence techniques in MANETs

A Gossip-based Synchronization Protocol for State Consistency in Distributed Applications

NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads

Messaging the Web: Implementing an SMS System in PHP